Academy of Art (SF)
Art Center College of Design (Pasadena)
Art Institute of Chicago
CalArts (L.A.)
CCA (formerly CCAC) (SF)
Cranbrook (Michigan)
MassArt
Minneapolis College of Art + Design
Parsons (NYC)
Pratt Institute (NYC)
RISD
RIT School of Design (NY)
Savannah College of Art and Design (GA)
School of Visual Arts (NYC)
SFSU
Yale School of Art

The Museum School of the MFA in Boston does not have a graduate program, nor does Cooper Union, so these are the sixteen domestic programs that I have found so far that look interesting.